OBO Foundry dashboard analysis¶

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/tmp/ipykernel_3438/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            19
RDF/XML Syntax    17
unknown           10
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 36 4606.042553 18162.770894 0.0 2.0 264.0 2226.5 124680.0
Declaration 36 985.468085 3329.331091 0.0 14.5 104.0 788.5 22818.0
SubClassOf 34 1105.148936 3620.741210 0.0 0.0 49.0 880.0 24611.0
ObjectPropertyDomain 32 24.425532 31.483429 0.0 0.0 18.0 26.0 133.0
ObjectPropertyRange 32 26.574468 33.017614 0.0 0.0 19.0 30.0 144.0
DataPropertyRange 28 9.851064 19.748394 0.0 0.0 1.0 9.5 97.0
SubObjectPropertyOf 27 35.659574 53.835206 0.0 0.0 7.0 52.5 214.0
InverseObjectProperties 27 10.489362 25.918662 0.0 0.0 1.0 8.5 126.0
DisjointClasses 26 272.723404 1789.278816 0.0 0.0 1.0 8.5 12277.0
ClassAssertion 25 98.872340 308.480400 0.0 0.0 1.0 20.0 1815.0
DataPropertyDomain 25 9.404255 34.846658 0.0 0.0 1.0 4.0 235.0
EquivalentClasses 22 47.978723 94.922964 0.0 0.0 0.0 61.5 395.0
TransitiveObjectProperty 21 2.787234 4.242314 0.0 0.0 0.0 4.5 15.0
SubAnnotationPropertyOf 16 9.936170 33.646115 0.0 0.0 0.0 9.0 228.0
SubDataPropertyOf 15 4.595745 11.435375 0.0 0.0 0.0 1.5 63.0
SymmetricObjectProperty 14 2.425532 4.543245 0.0 0.0 0.0 1.5 16.0
FunctionalDataProperty 14 1.021277 1.916625 0.0 0.0 0.0 1.5 8.0
FunctionalObjectProperty 14 1.851064 3.488981 0.0 0.0 0.0 1.5 11.0
InverseFunctionalObjectProperty 13 1.425532 3.090973 0.0 0.0 0.0 1.0 12.0
AnnotationPropertyRangeOf 13 5.638298 20.108862 0.0 0.0 0.0 1.0 134.0
IrrefexiveObjectProperty 12 2.617021 5.862753 0.0 0.0 0.0 0.5 22.0
ObjectPropertyAssertion 11 98.957447 341.514145 0.0 0.0 0.0 0.0 2051.0
AsymmetricObjectProperty 10 2.042553 4.795639 0.0 0.0 0.0 0.0 16.0
DisjointUnion 7 5.425532 18.648633 0.0 0.0 0.0 0.0 116.0
AnnotationPropertyDomain 6 0.255319 0.943354 0.0 0.0 0.0 0.0 6.0
EquivalentObjectProperties 6 1.361702 5.478914 0.0 0.0 0.0 0.0 36.0
DataPropertyAssertion 6 112.489362 543.213981 0.0 0.0 0.0 0.0 3617.0
DifferentIndividuals 5 0.382979 1.294691 0.0 0.0 0.0 0.0 6.0
DisjointObjectProperties 5 0.425532 1.528635 0.0 0.0 0.0 0.0 8.0
SubPropertyChainOf 5 0.787234 2.749989 0.0 0.0 0.0 0.0 13.0
ReflexiveObjectProperty 5 0.106383 0.311661 0.0 0.0 0.0 0.0 1.0
SameIndividual 3 0.659574 2.822862 0.0 0.0 0.0 0.0 17.0
NegativeObjectPropertyAssertion 2 0.042553 0.204030 0.0 0.0 0.0 0.0 1.0
Rule 2 0.255319 1.293262 0.0 0.0 0.0 0.0 8.0
EquivalentDataProperties 2 0.191489 0.924034 0.0 0.0 0.0 0.0 5.0
DatatypeDefinition 2 0.425532 2.772102 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 37 3901.978723 11306.896381 0.0 21.5 227.0 2621.0 70987.0
ObjectUnionOf 26 12.829787 21.335130 0.0 0.0 2.0 13.0 88.0
ObjectAllValuesFrom 24 20.106383 34.942334 0.0 0.0 1.0 28.5 162.0
ObjectSomeValuesFrom 22 134.531915 310.246105 0.0 0.0 0.0 98.0 1478.0
ObjectIntersectionOf 21 32.361702 93.588234 0.0 0.0 0.0 16.5 470.0
ObjectExactCardinality 19 4.872340 17.230682 0.0 0.0 0.0 3.0 114.0
DataExactCardinality 15 1.978723 3.756093 0.0 0.0 0.0 3.0 14.0
DataHasValue 13 30.510638 82.039458 0.0 0.0 0.0 4.0 494.0
DataAllValuesFrom 12 0.914894 1.920482 0.0 0.0 0.0 0.5 8.0
ObjectComplementOf 11 1.978723 4.932101 0.0 0.0 0.0 0.0 22.0
ObjectOneOf 9 12.212766 55.283827 0.0 0.0 0.0 0.0 272.0
ObjectMinCardinality 9 0.872340 2.428249 0.0 0.0 0.0 0.0 11.0
ObjectHasValue 9 6.021277 23.364307 0.0 0.0 0.0 0.0 121.0
DataSomeValuesFrom 7 0.553191 1.348244 0.0 0.0 0.0 0.0 4.0
ObjectMaxCardinality 5 19.872340 130.357138 0.0 0.0 0.0 0.0 894.0
DataMinCardinality 3 0.340426 2.045957 0.0 0.0 0.0 0.0 14.0
DataMaxCardinality 3 1.702128 9.181538 0.0 0.0 0.0 0.0 61.0

OBO Score (Experimental)

ontology score score_dash score_impact
30 OBO 0.338 0.571 0.106
19 IAO 0.300 0.600 0.000
43 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
31 OEO 0.285 0.571 0.000
17 FOAF 0.284 0.333 0.234
4 CHAMEO 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
34 QUDT 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
33 PROVO 0.274 0.504 0.043
12 EMMO_atomistic 0.252 0.504 0.000
36 SEMMD 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
35 SAREF 0.241 0.482 0.000
41 UO 0.234 0.467 0.000
38 SO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
39 SP 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
26 MaterialsMine 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
44 mvc 0.222 0.444 0.000
32 PMD 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
37 SKOS_MDO 0.200 0.400 0.000
45 periodictable 0.200 0.400 0.000
42 WILD 0.200 0.400 0.000
40 SSN 0.189 0.378 0.000
46 ssos 0.155 0.311 0.000
1 BWMD-DOMAIN 0.000 0.000 0.000
20 LPBFO 0.000 0.000 0.000
2 BWMD-MID 0.000 0.000 0.000
15 EMMO_mechanical_testing 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
16 EMMO_microstructure 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
28 NanoMine 0.000 0.000 0.000
5 CIF 0.000 0.000 0.000
23 MOL_TENSILE 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 47.0 0.193277 0.106519 0.0 0.1945 0.234 0.2745 0.338
score_dash 47.0 0.378255 0.208050 0.0 0.3555 0.444 0.5040 0.600
score_impact 47.0 0.008149 0.037509 0.0 0.0000 0.000 0.0000 0.234

OBO dependency graph